SNAP Library 6.0, User Reference  2020-12-09 16:24:20
SNAP, a general purpose, high performance system for analysis and manipulation of large networks
mag.h
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1 #ifndef snap_mag_h
2 #define snap_mag_h
3 
4 #include "Snap.h"
5 #include "kronecker.h"
6 
8 // MAG affinity matrix
9 
10 class TMAGAffMtx {
11  static const double NInf;
12 private:
15 public:
16  TMAGAffMtx() : MtxDim(-1), SeedMtx() { }
17  TMAGAffMtx(const int& Dim) : MtxDim(Dim), SeedMtx(Dim*Dim) { }
18  TMAGAffMtx(const TFltV& SeedMatrix);
19  TMAGAffMtx(const TMAGAffMtx& Kronecker) : MtxDim(Kronecker.MtxDim), SeedMtx(Kronecker.SeedMtx) { }
20  TMAGAffMtx& operator = (const TMAGAffMtx& Kronecker);
21  bool operator == (const TMAGAffMtx& Kronecker) const { return SeedMtx==Kronecker.SeedMtx; }
22  int GetPrimHashCd() const { return SeedMtx.GetPrimHashCd(); }
23  int GetSecHashCd() const { return SeedMtx.GetSecHashCd(); }
24 
25  // seed matrix
26  int GetDim() const { return MtxDim; }
27  int Len() const { return SeedMtx.Len(); }
28  bool Empty() const { return SeedMtx.Empty(); }
29  bool IsProbMtx() const; // probability (not log-lihelihood) matrix
30 
31  TFltV& GetMtx() { return SeedMtx; }
32  const TFltV& GetMtx() const { return SeedMtx; }
33  void SetMtx(const TFltV& ParamV) { SeedMtx = ParamV; }
34  void SetRndMtx(TRnd& Rnd, const int& PrmMtxDim = 2, const double& MinProb = 0.0);
35  void PutAllMtx(const double& Val) { SeedMtx.PutAll(Val); }
36  void GenMtx(const int& Dim) { MtxDim=Dim; SeedMtx.Gen(Dim*Dim); }
37  void SetEpsMtx(const double& Eps1, const double& Eps0, const int& Eps1Val=1, const int& Eps0Val=0);
38  void AddRndNoise(TRnd& Rnd, const double& SDev);
39  TStr GetMtxStr() const;
40 
41  const double& At(const int& Row, const int& Col) const { return SeedMtx[MtxDim*Row+Col].Val; }
42  double& At(const int& Row, const int& Col) { return SeedMtx[MtxDim*Row+Col].Val; }
43  const double& At(const int& ValN) const { return SeedMtx[ValN].Val; }
44  double& At(const int& ValN) { return SeedMtx[ValN].Val; }
45 
46  double GetMtxSum() const;
47  double GetRowSum(const int& RowId) const;
48  double GetColSum(const int& ColId) const;
49  double Normalize();
50 
51  void GetLLMtx(TMAGAffMtx& LLMtx);
52  void GetProbMtx(TMAGAffMtx& ProbMtx);
53  void Swap(TMAGAffMtx& Mtx);
54 
55  void Dump(const TStr& MtxNm = TStr(), const bool& Sort = false) const;
56  static double GetAvgAbsErr(const TMAGAffMtx& Mtx1, const TMAGAffMtx& Mtx2); // avg L1 on (sorted) parameters
57  static double GetAvgFroErr(const TMAGAffMtx& Mtx1, const TMAGAffMtx& Mtx2); // avg L2 on (sorted) parameters
58  static TMAGAffMtx GetMtx(TStr MatlabMtxStr);
59  static TMAGAffMtx GetRndMtx(TRnd& Rnd, const int& Dim = 2, const double& MinProb = 0.0);
60 };
61 
63 
65 // Simple MAG node attributes (Same Bernoulli for every attribute)
66 
68 public:
69  static TRnd Rnd;
70 private:
73 public:
74  TMAGNodeSimple() : Mu(0.5), Dim(-1) {}
75  TMAGNodeSimple(const int& _Dim, const double& _Mu = 0.5) : Dim(_Dim) { IAssert(_Mu >= 0.0 && _Mu <= 1.0); Mu = _Mu; }
76  TMAGNodeSimple(const TMAGNodeSimple& Simple) : Mu(Simple.Mu), Dim(Simple.Dim) {}
77 
78  TMAGNodeSimple& operator=(const TMAGNodeSimple& Simple) { Mu = Simple.Mu; Dim = Simple.Dim; return (*this); }
79 
80  void LoadTxt(const TStr& InFNm);
81  void SaveTxt(TStrV& OutStrV) const;
82  void AttrGen(TIntVV& AttrVV, const int& NNodes);
83 };
84 
86 // MAG node attributes with (different) Bernoulli
87 
88 class TMAGNodeBern {
89 public:
90  static TRnd Rnd;
91 private:
94 public:
95  TMAGNodeBern() : MuV(), Dim(-1) {}
96  TMAGNodeBern(const int& _Dim, const double& _Mu = 0.5) : MuV(_Dim), Dim(_Dim) { IAssert(_Mu >= 0.0 && _Mu <= 1.0); MuV.PutAll(_Mu); }
97  TMAGNodeBern(const TFltV& _MuV) : MuV(_MuV), Dim(_MuV.Len()) {}
98  TMAGNodeBern(const TMAGNodeBern& Dist) : MuV(Dist.MuV), Dim(Dist.Dim) {}
99 
100  TMAGNodeBern& operator=(const TMAGNodeBern& Dist);
101 
102  void SetMuV(const TFltV& _MuV) { MuV = _MuV; }
103  const TFltV& GetMuV() const { return MuV; }
104  void SetMu(const int& Attr, const double& Prob) { IAssert(Prob >= 0.0 && Prob <= 1.0); MuV[Attr] = Prob; }
105  double GetMu(const int& Attr) const { return MuV[Attr]; }
106 
107  void LoadTxt(const TStr& InFNm);
108  void SaveTxt(TStrV& OutStrV) const;
109  void AttrGen(TIntVV& AttrVV, const int& NNodes);
110 };
111 
113 // MAG node attributes with Beta + Bernoulli family
114 
116 public:
117  static TRnd Rnd;
118 private:
124 public:
125  TMAGNodeBeta() : AlphaV(), BetaV(), MuV(), Dim(-1), Dirty(true) {}
126  TMAGNodeBeta(const int& _Dim, const double& Alpha = 1, const double& Beta = 1) : AlphaV(_Dim), BetaV(_Dim), MuV(_Dim), Dim(_Dim), Dirty(true) { AlphaV.PutAll(Alpha); BetaV.PutAll(Beta); }
127  TMAGNodeBeta(const TFltV& _AlphaV, const TFltV& _BetaV) : AlphaV(_AlphaV), BetaV(_BetaV), Dirty(true) { IAssert(_AlphaV.Len() == _BetaV.Len()); Dim = _AlphaV.Len(); MuV.Gen(Dim); }
128 
129  TMAGNodeBeta& operator=(const TMAGNodeBeta& Dist);
130 
131  void SetBeta(const int& Attr, const double& Alpha, const double& Beta);
132  void GetBeta(const int& Attr, double& Alpha, double& Beta) const { IAssert(Attr < Dim); Alpha = AlphaV[Attr]; Beta = BetaV[Attr]; }
133  void SetBetaV(const TFltV& _AlphaV, const TFltV& _BetaV);
134  void GetBetaV(TFltV& _AlphaV, TFltV& _BetaV) const { _AlphaV = AlphaV; _BetaV = BetaV; }
135  bool GetMuV(TFltV& _MuV) const { if(!Dirty) { _MuV = MuV; } return Dirty; }
136 
137  void LoadTxt(const TStr& InFNm);
138  void SaveTxt(TStrV& OutStrV) const;
139  void AttrGen(TIntVV& AttrVV, const int& NNodes);
140 };
141 
143 // MAG model param. (node attribtes + affinity matrices)
144 
145 template <class TNodeAttr>
146 class TMAGParam {
147 public:
148  static TRnd Rnd;
149 private:
152  TNodeAttr NodeAttr;
153  TMAGAffMtxV AffMtxV;
154 
155 public:
156  TMAGParam() : NNodes(-1), NAttrs(-1), NodeAttr(), AffMtxV() {}
157  TMAGParam(const int& NumNodes, const int& NumAttrs) : NNodes(NumNodes), NAttrs(NumAttrs), NodeAttr(), AffMtxV(NumAttrs) {}
158  TMAGParam(const int& NumNodes, const TMAGAffMtxV& MtxV) : NNodes(NumNodes), NAttrs(MtxV.Len()), NodeAttr(), AffMtxV(MtxV) {}
159  TMAGParam(const int& NumNodes, const TStr& ConfFNm) : NNodes(NumNodes) { LoadTxt(ConfFNm); }
160  TMAGParam(const TMAGParam<TNodeAttr>& MAGParam) : NNodes(MAGParam.NNodes), NAttrs(MAGParam.NAttrs), NodeAttr(MAGParam.NodeAttr), AffMtxV(MAGParam.AffMtxV) {}
161  TMAGParam(const int& NumNodes, const int& NumAttrs, const TNodeAttr& Dist) : NNodes(NumNodes), NAttrs(NumAttrs), NodeAttr(Dist), AffMtxV(NumAttrs) {}
162 
164 
165  void Clr() { AffMtxV.Clr(); }
166 
167  void LoadTxt(const TStr& InFNm);
168  void SaveTxt(const TStr& OutFNm) const;
169 
170  void SetNodes(const int& Nodes) { NNodes = Nodes; }
171  const int GetNodes() const { return NNodes; }
172 
173  void SetAttrs(const int& Attrs);
174  const int GetAttrs() const { return NAttrs; }
175 
176  void SetNodeAttr(const TNodeAttr& Dist) { NodeAttr = Dist; }
177  const TNodeAttr& GetNodeAttr() const { return NodeAttr; }
178 
179  const int GetDim(const int& Attr) const { return AffMtxV[Attr].GetDim(); }
180  void GetDimV(TIntV& DimV) const;
181 
182  void SetMtxVal(const int& Attr, const int& Row, const int& Col, const double& Val) { AffMtxV[Attr].At(Row, Col) = Val; }
183  void SetMtx(const int& Attr, const TMAGAffMtx& Mtx) { AffMtxV[Attr] = Mtx; }
184  void SetMtxV(const TMAGAffMtxV& MtxV) { NAttrs = AffMtxV.Len(); AffMtxV = MtxV; }
185  void SetMtxAll(const TMAGAffMtx& Mtx) { AffMtxV.PutAll(Mtx); }
186  const double GetMtxVal(const int& Attr, const int& Row, const int& Col) const { return AffMtxV[Attr].At(Row, Col); }
187  const TMAGAffMtx& GetMtx(const int& Attr) const { return AffMtxV[Attr]; }
188  void GetMtxV(TMAGAffMtxV& MtxV) const { MtxV = AffMtxV; }
189 
190  PNGraph GenMAG(TIntVV& AttrVV, const bool& IsDir = false, const int& Seed = 1);
191  PNGraph GenAttrMAG(const TIntVV& AttrVV, const bool& IsDir = false, const int& Seed = 1);
192 };
193 
194 template <class TNodeAttr>
196  NNodes = MAGParam.NNodes;
197  NAttrs = MAGParam.NAttrs;
198  AffMtxV = MAGParam.AffMtxV;
199  NodeAttr = MAGParam.NodeAttr;
200 
201  return (*this);
202 };
203 
204 template <class TNodeAttr>
206  NodeAttr.LoadTxt(InFNm);
207 
208  char buf[1024];
209  FILE *fp = fopen(InFNm.CStr(), "r");
210  NAttrs = 0;
211  AffMtxV.Gen(10, 0);
212  while(fgets(buf, sizeof(buf), fp) != NULL) {
213  strtok(buf, "&");
214  char *token = strtok(NULL, "\r\n");
215  NAttrs++;
216  AffMtxV.Add(TMAGAffMtx::GetMtx(TStr(token)));
217  }
218  fclose(fp);
219 };
220 
221 template <class TNodeAttr>
222 void TMAGParam<TNodeAttr>::SaveTxt(const TStr& OutFNm) const {
223  TStrV OutStrV;
224  NodeAttr.SaveTxt(OutStrV);
225 
226  FILE *fp = fopen(OutFNm.CStr(), "w");
227  fprintf(fp, "# %d nodes with %d attributes\n", NNodes(), NAttrs());
228  for(int i = 0; i < NAttrs; i++) {
229  TStr MtxStr = AffMtxV[i].GetMtxStr();
230  fprintf(fp, "%s & %s\n", OutStrV[i].CStr(), MtxStr.GetSubStr(1, MtxStr.Len()-2).CStr());
231  }
232  fclose(fp);
233 };
234 
235 template <class TNodeAttr>
236 void TMAGParam<TNodeAttr>::SetAttrs(const int& Attrs) {
237  NAttrs = Attrs;
238  AffMtxV.Gen(Attrs);
239 };
240 
241 template <class TNodeAttr>
243  DimV.Gen(NAttrs);
244  for(int i = 0; i < NAttrs; i++) {
245  DimV[i] = AffMtxV[i].GetDim();
246  }
247 };
248 
249 template <class TNodeAttr>
250 PNGraph TMAGParam<TNodeAttr>::GenAttrMAG(const TIntVV& AttrVV, const bool& IsDir, const int& Seed) {
251  PNGraph Graph = TNGraph::New(NNodes, -1);
252  for(int i = 0; i < NNodes; i++) {
253  Graph->AddNode(i);
254  }
255 
256  if(Seed > 0) {
257  TNodeAttr::Rnd.PutSeed(Seed);
258  }
259 
260  IAssert(AttrVV.GetYDim() == NAttrs);
261  for(int i = 0; i < NNodes; i++) {
262  for(int l = 0; l < NAttrs; l++) {
263  IAssert(AttrVV.At(i, l) < AffMtxV[l].GetDim());
264  }
265  }
266 
267  for(int i = 0; i < NNodes; i++) {
268  for(int j = i; j < NNodes; j++) {
269  double Prob = 1.0;
270  for(int l = 0; l < NAttrs; l++) {
271  Prob *= AffMtxV[l].At(AttrVV.At(i, l), AttrVV.At(j, l));
272  }
273 
274  if(TNodeAttr::Rnd.GetUniDev() < Prob) {
275  Graph->AddEdge(i, j);
276  if(! IsDir && i != j) { Graph->AddEdge(j, i); }
277  }
278 
279  if(IsDir && i != j) {
280  Prob = 1.0;
281  for(int l = 0; l < NAttrs; l++) {
282  Prob *= AffMtxV[l].At(AttrVV.At(j, l), AttrVV.At(i, l));
283  }
284  if(TNodeAttr::Rnd.GetUniDev() < Prob) {
285  Graph->AddEdge(j, i);
286  }
287  }
288  }
289  }
290 
291  return Graph;
292 };
293 
294 template <class TNodeAttr>
295 PNGraph TMAGParam<TNodeAttr>::GenMAG(TIntVV& AttrVV, const bool& IsDir, const int& Seed) {
296  TNodeAttr::Rnd.PutSeed(Seed);
297  NodeAttr.AttrGen(AttrVV, NNodes);
298 
299  IAssert(AttrVV.GetYDim() == NAttrs);
300  for(int i = 0; i < NNodes; i++) {
301  for(int l = 0; l < NAttrs; l++) {
302  IAssert(AttrVV.At(i, l) < AffMtxV[l].GetDim());
303  }
304  }
305 
306  PNGraph Graph = GenAttrMAG(AttrVV, IsDir, 0);
307  return Graph;
308 
309 /*
310  for(int i = 0; i < NNodes; i++) {
311  for(int j = i; j < NNodes; j++) {
312  double Prob = 1.0;
313  for(int l = 0; l < NAttrs; l++) {
314  Prob *= AffMtxV[l].At(AttrVV.At(i, l), AttrVV.At(j, l));
315  }
316  if(TNodeAttr::Rnd.GetUniDev() < Prob) {
317  Graph->AddEdge(i, j);
318  if(! IsDir && i != j) { Graph->AddEdge(j, i); }
319  }
320 
321  if(IsDir && i != j) {
322  Prob = 1.0;
323  for(int l = 0; l < NAttrs; l++) {
324  Prob *= AffMtxV[l].At(AttrVV.At(j, l), AttrVV.At(i, l));
325  }
326  if(TNodeAttr::Rnd.GetUniDev() < Prob) {
327  Graph->AddEdge(j, i);
328  }
329  }
330  }
331  }
332 
333  return Graph;
334 */
335 };
336 
337 
339 // MAGFit with Bernoulli node attributes
340 
341 class TMAGFitBern {
342 private:
351 
355 
356 public:
357  TMAGFitBern() : PhiVV(), KnownVV(), Graph(), Param(), ESpeedUp(true), MSpeedUp(true), Debug(false), AvgPhiV(), AvgPhiPairVV(), NormConst(1.0) { }
358  TMAGFitBern(const PNGraph& G, const int& NAttrs) : PhiVV(G->GetNodes(), NAttrs), KnownVV(G->GetNodes(), NAttrs), Graph(G), Param(G->GetNodes(), NAttrs), ESpeedUp(true), MSpeedUp(true), Debug(false), AvgPhiV(NAttrs), AvgPhiPairVV(NAttrs, NAttrs), NormConst(1.0) { }
359 
360  TMAGFitBern(const PNGraph& G, const TStr& InitFNm) : Param(G->GetNodes(), InitFNm), ESpeedUp(true), MSpeedUp(true), Debug(false), NormConst(1.0) {
361  const int NNodes = G->GetNodes();
362  const int NAttrs = Param.GetAttrs();
363 
364  printf("NAttrs = %d\n", NAttrs);
365  SetGraph(G);
366  PhiVV.Gen(NNodes, NAttrs);
367  KnownVV.Gen(NNodes, NAttrs);
368  AvgPhiV.Gen(NAttrs);
369  AvgPhiPairVV.Gen(NAttrs, NAttrs);
370  }
371 
372  void Clr() { PhiVV.Clr(); KnownVV.Clr(); }
373  void SaveTxt(const TStr& FNm);
374 
375  const int GetNodes() const { return Param.GetNodes(); }
376  const int GetAttrs() const { return Param.GetAttrs(); }
377  const TMAGParam<TMAGNodeBern>& GetParams() const { return Param; }
378  const TMAGNodeBern& GetNodeAttr() const { return Param.GetNodeAttr(); }
379  const TFltV& GetMuV() const { const TMAGNodeBern& Dist = Param.GetNodeAttr(); return Dist.GetMuV(); }
380  void SetMuV(const TFltV& MuV) { TMAGNodeBern Dist = Param.GetNodeAttr(); Dist.SetMuV(MuV); Param.SetNodeAttr(Dist); }
381  void GetMtxV(TMAGAffMtxV& MtxV) const { Param.GetMtxV(MtxV); }
382  void SetMtxV(const TMAGAffMtxV& MtxV) { Param.SetMtxV(MtxV); }
383  PNGraph GetGraph() { return Graph; }
384  void SetGraph(const PNGraph& GraphPt);
385 
386  void SetDebug(const bool _Debug) { Debug = _Debug; }
387  void SetAlgConf(const bool EStep = true, const bool MStep = true) { ESpeedUp = EStep; MSpeedUp = MStep; }
388 
389  void Init(const TFltV& MuV, const TMAGAffMtxV& AffMtxV);
390 // void PerturbInit(const TFltV& MuV, const TMAGAffMtxV& AffMtxV, const double& PerturbRate);
391  void RandomInit(const TFltV& MuV, const TMAGAffMtxV& AffMtxV, const int& Seed);
392  const TFltVV& GetPhiVV() const { return PhiVV; }
393  void SetPhiVV(const TIntVV& AttrVV, const int KnownIds = 0);
394  void SetPhiVV(const TFltVV& AttrVV, const int KnownIds = 0) { PhiVV = AttrVV; KnownVV.Gen(PhiVV.GetXDim(), PhiVV.GetYDim()); KnownVV.PutAll(false); for(int i = 0; i < KnownIds; i++) { KnownVV.PutY(i, true); } }
395 
396  const double GetInCoeff(const int& i, const int& j, const int& l, const int& A, const TMAGAffMtx& Theta) const;
397  const double GetAvgInCoeff(const int& i, const int& AId, const int& A, const TMAGAffMtx& Theta) const;
398  const double GetOutCoeff(const int& i, const int& j, const int& l, const int& A, const TMAGAffMtx& Theta) const;
399  const double GetAvgOutCoeff(const int& i, const int& AId, const int& A, const TMAGAffMtx& Theta) const;
400  const double GetProbPhi(const int& NId1, const int& NId2, const int& AId, const int& Attr1, const int& Attr2) const;
401  const double GetProbMu(const int& NId1, const int& NId2, const int& AId, const int& Attr1, const int& Attr2, const bool Left = false, const bool Right = false) const;
402  const double GetThetaLL(const int& NId1, const int& NId2, const int& AId) const;
403  const double GetAvgThetaLL(const int& NId1, const int& NId2, const int& AId, const bool Left = false, const bool Right = false) const;
404  const double GetSqThetaLL(const int& NId1, const int& NId2, const int& AId) const;
405  const double GetAvgSqThetaLL(const int& NId1, const int& NId2, const int& AId, const bool Left = false, const bool Right = false) const;
406  const double GetProdLinWeight(const int& NId1, const int& NId2) const;
407  const double GetAvgProdLinWeight(const int& NId1, const int& NId2, const bool Left = false, const bool Right = false) const;
408  const double GetProdSqWeight(const int& NId1, const int& NId2) const;
409  const double GetAvgProdSqWeight(const int& NId1, const int& NId2, const bool Left = false, const bool Right = false) const;
410 
411  const double GetEstNoEdgeLL(const int& NId, const int& AId) const;
412  const double GradPhiMI(const double& x, const int& NId, const int& AId, const double& Lambda, const double& DeltaQ, const TFltVV& CntVV);
413  const double ObjPhiMI(const double& x, const int& NId, const int& AId, const double& Lambda, const double& Q0, const double& Q1, const TFltVV& CntVV);
414  const double UpdatePhiMI(const double& Lambda, const int& NId, const int& AId, double& Phi);
415  const double UpdateApxPhiMI(const double& Lambda, const int& NId, const int& AId, double& Phi, TFltVV& ProdVV);
416  const double UpdatePhi(const int& NId, const int& AId, double& Phi);
417  const double UpdateMu(const int& AId);
418  const void PrepareUpdateAffMtx(TFltVV& ProdVV, TFltVV& SqVV);
419  const void PrepareUpdateApxAffMtx(TFltVV& ProdVV, TFltVV& SqVV);
420 
421  const double UpdateAffMtx(const int& AId, const double& LrnRate, const double& MaxGrad, const double& Lambda, TFltVV& ProdVV, TFltVV& SqVV, TMAGAffMtx& NewMtx);
422  const double UpdateAffMtxV(const int& GradIter, const double& LrnRate, const double& MaxGrad, const double& Lambda, const int& NReal = 0);
423  const void GradAffMtx(const int& AId, const TFltVV& ProdVV, const TFltVV& SqVV, const TMAGAffMtx& CurMtx, TFltV& GradV);
424  const void GradApxAffMtx(const int& AId, const TFltVV& ProdVV, const TFltVV& SqVV, const TMAGAffMtx& CurMtx, TFltV& GradV);
425 
426  /* EM algorithm */
427  double DoEStepOneIter(const TFltV& TrueMuV, TFltVV& NewPhi, const double& Lambda);
428  double DoEStepApxOneIter(const TFltV& TrueMuV, TFltVV& NewPhi, const double& Lambda);
429  double DoEStep(const TFltV& TrueMuV, const int& NIter, double& LL, const double& Lambda);
430  void DoMStep(const int& GradIter, const double& LrnRate, const double& MaxGrad, const double& Lambda, const int& NReal = 0);
431  void DoEMAlg(const int& NStep, const int& NEstep, const int& NMstep, const double& LrnRate, const double& MaxGrad, const double& Lambda, const double& ReInit, const int& NReal = 0);
432 
433  void CountAttr(TFltV& EstMuV) const;
434  void SortAttrOrdering(const TFltV& TrueMuV, TIntV& IndexV) const;
435 
436  const double ComputeJointOneLL(const TIntVV& AttrVV) const;
437  const double ComputeJointLL(int NSample) const;
438  const double ComputeJointAdjLL(const TIntVV& AttrVV) const;
439  const double ComputeApxLL() const;
440  const double ComputeApxAdjLL() const;
441 
442  void MakeCCDF(const TFltPrV& RawV, TFltPrV& CcdfV);
443  void PlotProperties(const TStr& FNm);
444 
445  static const double ComputeMI(const TIntVV& AttrV, const int AId1, const int AId2);
446  static const double ComputeMI(const TFltVV& AttrV, const int AId1, const int AId2);
447  static const double ComputeMI(const TIntVV& AttrV);
448  static const double ComputeMI(const TFltVV& AttrV);
449  void NormalizeAffMtxV(TMAGAffMtxV& MtxV, const bool UseMu = false);
450  void UnNormalizeAffMtxV(TMAGAffMtxV& MtxV, const bool UseMu = false);
451 private:
452  const bool NextPermutation(TIntV& IndexV) const;
453 };
454 
455 const double LogSumExp(const double LogVal1, const double LogVal2);
456 const double LogSumExp(const TFltV& LogValV);
457 const double LogSumExp(const double *LogValArray, const int Len);
458 
459 #endif // snap_mag_h
const double ComputeJointAdjLL(const TIntVV &AttrVV) const
Definition: mag.cpp:1942
#define IAssert(Cond)
Definition: bd.h:262
const int GetDim(const int &Attr) const
Definition: mag.h:179
void SetNodeAttr(const TNodeAttr &Dist)
Definition: mag.h:176
TMAGNodeBern & operator=(const TMAGNodeBern &Dist)
Definition: mag.cpp:244
const double GetAvgSqThetaLL(const int &NId1, const int &NId2, const int &AId, const bool Left=false, const bool Right=false) const
Definition: mag.cpp:620
void LoadTxt(const TStr &InFNm)
Definition: mag.h:205
void DoEMAlg(const int &NStep, const int &NEstep, const int &NMstep, const double &LrnRate, const double &MaxGrad, const double &Lambda, const double &ReInit, const int &NReal=0)
Definition: mag.cpp:1630
void Clr()
Definition: ds.h:2246
TFlt Mu
Definition: mag.h:71
void GetBeta(const int &Attr, double &Alpha, double &Beta) const
Definition: mag.h:132
TMAGNodeSimple(const TMAGNodeSimple &Simple)
Definition: mag.h:76
const bool NextPermutation(TIntV &IndexV) const
Definition: mag.cpp:1867
int GetPrimHashCd() const
Returns primary hash code of the vector. Used by THash.
Definition: ds.h:999
int Len() const
Definition: dt.h:490
bool Debug
Definition: mag.h:347
const int GetNodes() const
Definition: mag.h:375
TVec< TFltV > MuHisV
Definition: mag.h:352
TFltV LLHisV
Definition: mag.h:354
const int GetAttrs() const
Definition: mag.h:174
TMAGParam< TMAGNodeBern > Param
Definition: mag.h:346
TMAGNodeBern(const int &_Dim, const double &_Mu=0.5)
Definition: mag.h:96
void GetMtxV(TMAGAffMtxV &MtxV) const
Definition: mag.h:381
Definition: dt.h:11
const double GetAvgInCoeff(const int &i, const int &AId, const int &A, const TMAGAffMtx &Theta) const
Definition: mag.cpp:558
TMAGAffMtx & operator=(const TMAGAffMtx &Kronecker)
Definition: mag.cpp:19
const double GetEstNoEdgeLL(const int &NId, const int &AId) const
Definition: mag.cpp:746
static PNGraph New()
Static constructor that returns a pointer to the graph. Call: PNGraph Graph = TNGraph::New().
Definition: graph.h:481
void Swap(TMAGAffMtx &Mtx)
Definition: mag.cpp:90
PNGraph GenAttrMAG(const TIntVV &AttrVV, const bool &IsDir=false, const int &Seed=1)
Definition: mag.h:250
TFltV BetaV
Definition: mag.h:120
void SetDebug(const bool _Debug)
Definition: mag.h:386
void SetMuV(const TFltV &MuV)
Definition: mag.h:380
TMAGFitBern(const PNGraph &G, const TStr &InitFNm)
Definition: mag.h:360
TInt Dim
Definition: mag.h:122
TFltV SeedMtx
Definition: mag.h:14
void Dump(const TStr &MtxNm=TStr(), const bool &Sort=false) const
Definition: mag.cpp:128
TFltV MuV
Definition: mag.h:121
static double GetAvgAbsErr(const TMAGAffMtx &Mtx1, const TMAGAffMtx &Mtx2)
Definition: mag.cpp:147
void NormalizeAffMtxV(TMAGAffMtxV &MtxV, const bool UseMu=false)
Definition: mag.cpp:1454
void SetAttrs(const int &Attrs)
Definition: mag.h:236
TMAGAffMtx(const int &Dim)
Definition: mag.h:17
TMAGAffMtxV AffMtxV
Definition: mag.h:153
int GetSecHashCd() const
Definition: mag.h:23
const double GetOutCoeff(const int &i, const int &j, const int &l, const int &A, const TMAGAffMtx &Theta) const
Definition: mag.cpp:554
TMAGNodeBern()
Definition: mag.h:95
TInt Dim
Definition: mag.h:93
TMAGParam(const int &NumNodes, const int &NumAttrs, const TNodeAttr &Dist)
Definition: mag.h:161
TSizeTy Len() const
Returns the number of elements in the vector.
Definition: ds.h:575
void MakeCCDF(const TFltPrV &RawV, TFltPrV &CcdfV)
Definition: mag.cpp:1703
int GetSecHashCd() const
Returns secondary hash code of the vector. Used by THash.
Definition: ds.h:1011
bool GetMuV(TFltV &_MuV) const
Definition: mag.h:135
static const double NInf
Definition: mag.h:11
void CountAttr(TFltV &EstMuV) const
Definition: mag.cpp:1814
int GetNodes() const
Returns the number of nodes in the graph.
Definition: graph.h:503
TStr GetSubStr(const int &BChN, const int &EChN) const
Definition: dt.cpp:811
void SetNodes(const int &Nodes)
Definition: mag.h:170
void SaveTxt(TStrV &OutStrV) const
Definition: mag.cpp:232
double GetRowSum(const int &RowId) const
Definition: mag.cpp:102
int AddNode(int NId=-1)
Adds a node of ID NId to the graph.
Definition: graph.cpp:236
TMAGAffMtx(const TMAGAffMtx &Kronecker)
Definition: mag.h:19
TMAGParam()
Definition: mag.h:156
TMAGNodeBeta & operator=(const TMAGNodeBeta &Dist)
Definition: mag.cpp:299
const double UpdatePhiMI(const double &Lambda, const int &NId, const int &AId, double &Phi)
Definition: mag.cpp:826
TMAGNodeBeta(const TFltV &_AlphaV, const TFltV &_BetaV)
Definition: mag.h:127
const double GetSqThetaLL(const int &NId1, const int &NId2, const int &AId) const
Definition: mag.cpp:609
double Normalize()
Definition: mag.cpp:116
const double GetProdSqWeight(const int &NId1, const int &NId2) const
Definition: mag.cpp:653
TVec< TMAGAffMtxV > MtxHisV
Definition: mag.h:353
void LoadTxt(const TStr &InFNm)
Definition: mag.cpp:343
double & At(const int &ValN)
Definition: mag.h:44
const void GradApxAffMtx(const int &AId, const TFltVV &ProdVV, const TFltVV &SqVV, const TMAGAffMtx &CurMtx, TFltV &GradV)
Definition: mag.cpp:1346
static TRnd Rnd
Definition: mag.h:117
Definition: dt.h:1386
TBool Dirty
Definition: mag.h:123
TMAGParam(const int &NumNodes, const int &NumAttrs)
Definition: mag.h:157
bool Empty() const
Tests whether the vector is empty.
Definition: ds.h:570
void PutAllMtx(const double &Val)
Definition: mag.h:35
void UnNormalizeAffMtxV(TMAGAffMtxV &MtxV, const bool UseMu=false)
Definition: mag.cpp:1492
void AttrGen(TIntVV &AttrVV, const int &NNodes)
Definition: mag.cpp:201
void SetPhiVV(const TIntVV &AttrVV, const int KnownIds=0)
Definition: mag.cpp:399
void RandomInit(const TFltV &MuV, const TMAGAffMtxV &AffMtxV, const int &Seed)
Definition: mag.cpp:510
static double GetAvgFroErr(const TMAGAffMtx &Mtx1, const TMAGAffMtx &Mtx2)
Definition: mag.cpp:160
PNGraph GetGraph()
Definition: mag.h:383
void GetMtxV(TMAGAffMtxV &MtxV) const
Definition: mag.h:188
const TFltV & GetMtx() const
Definition: mag.h:32
void LoadTxt(const TStr &InFNm)
Definition: mag.cpp:215
const TMAGNodeBern & GetNodeAttr() const
Definition: mag.h:378
void SetGraph(const PNGraph &GraphPt)
Definition: mag.cpp:385
bool IsProbMtx() const
Definition: mag.cpp:27
const double GetAvgProdSqWeight(const int &NId1, const int &NId2, const bool Left=false, const bool Right=false) const
Definition: mag.cpp:664
const double GetInCoeff(const int &i, const int &j, const int &l, const int &A, const TMAGAffMtx &Theta) const
Definition: mag.cpp:550
const void GradAffMtx(const int &AId, const TFltVV &ProdVV, const TFltVV &SqVV, const TMAGAffMtx &CurMtx, TFltV &GradV)
Definition: mag.cpp:1320
bool ESpeedUp
Definition: mag.h:347
TMAGParam(const int &NumNodes, const TStr &ConfFNm)
Definition: mag.h:159
void Clr(const bool &DoDel=true, const TSizeTy &NoDelLim=-1)
Clears the contents of the vector.
Definition: ds.h:1022
void PlotProperties(const TStr &FNm)
Definition: mag.cpp:1727
const TFltV & GetMuV() const
Definition: mag.h:379
void SetAlgConf(const bool EStep=true, const bool MStep=true)
Definition: mag.h:387
int Len() const
Definition: mag.h:27
void GetProbMtx(TMAGAffMtx &ProbMtx)
Definition: mag.cpp:82
const double GetAvgThetaLL(const int &NId1, const int &NId2, const int &AId, const bool Left=false, const bool Right=false) const
Definition: mag.cpp:598
TVec< TMAGAffMtx > TMAGAffMtxV
Definition: mag.h:62
const double UpdateAffMtx(const int &AId, const double &LrnRate, const double &MaxGrad, const double &Lambda, TFltVV &ProdVV, TFltVV &SqVV, TMAGAffMtx &NewMtx)
Definition: mag.cpp:1418
TMAGParam(const TMAGParam< TNodeAttr > &MAGParam)
Definition: mag.h:160
Definition: ds.h:2223
TInt MtxDim
Definition: mag.h:13
TBoolVV KnownVV
Definition: mag.h:344
const void PrepareUpdateApxAffMtx(TFltVV &ProdVV, TFltVV &SqVV)
Definition: mag.cpp:1545
int AddEdge(const int &SrcNId, const int &DstNId)
Adds an edge from node SrcNId to node DstNId to the graph.
Definition: graph.cpp:321
const double GetProdLinWeight(const int &NId1, const int &NId2) const
Definition: mag.cpp:631
const double UpdateMu(const int &AId)
Definition: mag.cpp:1299
TFltV MuV
Definition: mag.h:92
const double ComputeJointOneLL(const TIntVV &AttrVV) const
Definition: mag.cpp:1900
void PutAll(const TVal &Val)
Sets all elements of the vector to value Val.
Definition: ds.h:1229
TMAGNodeSimple & operator=(const TMAGNodeSimple &Simple)
Definition: mag.h:78
const double & At(const int &ValN) const
Definition: mag.h:43
void SetBetaV(const TFltV &_AlphaV, const TFltV &_BetaV)
Definition: mag.cpp:315
TSizeTy GetYDim() const
Definition: ds.h:2251
const TFltV & GetMuV() const
Definition: mag.h:103
void PutAll(const TVal &Val)
Definition: ds.h:2268
const double GetThetaLL(const int &NId1, const int &NId2, const int &AId) const
Definition: mag.cpp:587
void SetMtx(const TFltV &ParamV)
Definition: mag.h:33
void GetDimV(TIntV &DimV) const
Definition: mag.h:242
TNodeAttr NodeAttr
Definition: mag.h:152
const double UpdatePhi(const int &NId, const int &AId, double &Phi)
Definition: mag.cpp:756
TMAGNodeSimple()
Definition: mag.h:74
TMAGNodeSimple(const int &_Dim, const double &_Mu=0.5)
Definition: mag.h:75
const double GetMtxVal(const int &Attr, const int &Row, const int &Col) const
Definition: mag.h:186
double GetMu(const int &Attr) const
Definition: mag.h:105
double GetColSum(const int &ColId) const
Definition: mag.cpp:109
void Clr()
Definition: mag.h:372
double DoEStepOneIter(const TFltV &TrueMuV, TFltVV &NewPhi, const double &Lambda)
Definition: mag.cpp:1056
void Clr()
Definition: mag.h:165
TMAGAffMtx()
Definition: mag.h:16
const TMAGParam< TMAGNodeBern > & GetParams() const
Definition: mag.h:377
void AttrGen(TIntVV &AttrVV, const int &NNodes)
Definition: mag.cpp:250
void SetBeta(const int &Attr, const double &Alpha, const double &Beta)
Definition: mag.cpp:308
TFlt NormConst
Definition: mag.h:350
const double GetProbPhi(const int &NId1, const int &NId2, const int &AId, const int &Attr1, const int &Attr2) const
Definition: mag.cpp:570
double DoEStepApxOneIter(const TFltV &TrueMuV, TFltVV &NewPhi, const double &Lambda)
Definition: mag.cpp:1134
void SetMuV(const TFltV &_MuV)
Definition: mag.h:102
Definition: mag.h:10
void AttrGen(TIntVV &AttrVV, const int &NNodes)
Definition: mag.cpp:323
static TRnd Rnd
Definition: mag.h:148
void SetMtxV(const TMAGAffMtxV &MtxV)
Definition: mag.h:184
static TMAGAffMtx GetRndMtx(TRnd &Rnd, const int &Dim=2, const double &MinProb=0.0)
Definition: mag.cpp:191
TFltV AlphaV
Definition: mag.h:119
const double ComputeJointLL(int NSample) const
Definition: mag.cpp:1976
TFltVV PhiVV
Definition: mag.h:343
const TMAGAffMtx & GetMtx(const int &Attr) const
Definition: mag.h:187
const double LogSumExp(const double LogVal1, const double LogVal2)
Definition: mag.cpp:675
Definition: dt.h:1137
const double GetAvgProdLinWeight(const int &NId1, const int &NId2, const bool Left=false, const bool Right=false) const
Definition: mag.cpp:642
void SetMtxAll(const TMAGAffMtx &Mtx)
Definition: mag.h:185
void SortAttrOrdering(const TFltV &TrueMuV, TIntV &IndexV) const
Definition: mag.cpp:1828
TMAGParam< TNodeAttr > & operator=(const TMAGParam< TNodeAttr > &MAGParam)
Definition: mag.h:195
TStr GetMtxStr() const
Definition: mag.cpp:63
void SetMtxV(const TMAGAffMtxV &MtxV)
Definition: mag.h:382
TFltV AvgPhiV
Definition: mag.h:348
PNGraph GenMAG(TIntVV &AttrVV, const bool &IsDir=false, const int &Seed=1)
Definition: mag.h:295
const double ComputeApxAdjLL() const
Definition: mag.cpp:2046
TMAGNodeBeta(const int &_Dim, const double &Alpha=1, const double &Beta=1)
Definition: mag.h:126
void SaveTxt(const TStr &OutFNm) const
Definition: mag.h:222
void SetMtxVal(const int &Attr, const int &Row, const int &Col, const double &Val)
Definition: mag.h:182
void SaveTxt(TStrV &OutStrV) const
Definition: mag.cpp:287
void SetPhiVV(const TFltVV &AttrVV, const int KnownIds=0)
Definition: mag.h:394
TMAGParam(const int &NumNodes, const TMAGAffMtxV &MtxV)
Definition: mag.h:158
void GetLLMtx(TMAGAffMtx &LLMtx)
Definition: mag.cpp:74
TMAGFitBern(const PNGraph &G, const int &NAttrs)
Definition: mag.h:358
static TRnd Rnd
Definition: mag.h:69
Definition: dt.h:412
const void PrepareUpdateAffMtx(TFltVV &ProdVV, TFltVV &SqVV)
Definition: mag.cpp:1532
TInt NAttrs
Definition: mag.h:151
TSizeTy GetXDim() const
Definition: ds.h:2250
TMAGNodeBeta()
Definition: mag.h:125
double DoEStep(const TFltV &TrueMuV, const int &NIter, double &LL, const double &Lambda)
Definition: mag.cpp:1272
const double GetAvgOutCoeff(const int &i, const int &AId, const int &A, const TMAGAffMtx &Theta) const
Definition: mag.cpp:564
const TNodeAttr & GetNodeAttr() const
Definition: mag.h:177
const TFltVV & GetPhiVV() const
Definition: mag.h:392
TInt Dim
Definition: mag.h:72
static TRnd Rnd
Definition: mag.h:90
void SetMu(const int &Attr, const double &Prob)
Definition: mag.h:104
void SetEpsMtx(const double &Eps1, const double &Eps0, const int &Eps1Val=1, const int &Eps0Val=0)
Definition: mag.cpp:44
TMAGFitBern()
Definition: mag.h:357
double GetMtxSum() const
Definition: mag.cpp:95
void SetRndMtx(TRnd &Rnd, const int &PrmMtxDim=2, const double &MinProb=0.0)
Definition: mag.cpp:34
Definition: bd.h:196
void SaveTxt(const TStr &FNm)
Definition: mag.cpp:423
const int GetNodes() const
Definition: mag.h:171
const double UpdateApxPhiMI(const double &Lambda, const int &NId, const int &AId, double &Phi, TFltVV &ProdVV)
Definition: mag.cpp:930
bool Empty() const
Definition: mag.h:28
void Gen(const TSizeTy &_Vals)
Constructs a vector (an array) of _Vals elements.
Definition: ds.h:523
void DoMStep(const int &GradIter, const double &LrnRate, const double &MaxGrad, const double &Lambda, const int &NReal=0)
Definition: mag.cpp:1608
const double & At(const int &Row, const int &Col) const
Definition: mag.h:41
const int GetAttrs() const
Definition: mag.h:376
int GetPrimHashCd() const
Definition: mag.h:22
double & At(const int &Row, const int &Col)
Definition: mag.h:42
TFltV & GetMtx()
Definition: mag.h:31
void GetBetaV(TFltV &_AlphaV, TFltV &_BetaV) const
Definition: mag.h:134
TInt NNodes
Definition: mag.h:150
void SaveTxt(TStrV &OutStrV) const
Definition: mag.cpp:373
char * CStr()
Definition: dt.h:479
TMAGNodeBern(const TMAGNodeBern &Dist)
Definition: mag.h:98
Definition: mag.h:146
static const double ComputeMI(const TIntVV &AttrV, const int AId1, const int AId2)
Definition: mag.cpp:2091
Definition: dt.h:974
void AddRndNoise(TRnd &Rnd, const double &SDev)
Definition: mag.cpp:52
PNGraph Graph
Definition: mag.h:345
const double UpdateAffMtxV(const int &GradIter, const double &LrnRate, const double &MaxGrad, const double &Lambda, const int &NReal=0)
Definition: mag.cpp:1558
bool MSpeedUp
Definition: mag.h:347
void SetMtx(const int &Attr, const TMAGAffMtx &Mtx)
Definition: mag.h:183
bool operator==(const TMAGAffMtx &Kronecker) const
Definition: mag.h:21
void Init(const TFltV &MuV, const TMAGAffMtxV &AffMtxV)
Definition: mag.cpp:452
int GetDim() const
Definition: mag.h:26
void Gen(const TSizeTy &_XDim, const TSizeTy &_YDim)
Definition: ds.h:2247
TFltVV AvgPhiPairVV
Definition: mag.h:349
void PutY(const TSizeTy &Y, const TVal &Val)
Definition: ds.h:2271
const double ComputeApxLL() const
Definition: mag.cpp:2005
const double ObjPhiMI(const double &x, const int &NId, const int &AId, const double &Lambda, const double &Q0, const double &Q1, const TFltVV &CntVV)
Definition: mag.cpp:722
void LoadTxt(const TStr &InFNm)
Definition: mag.cpp:264
TMAGNodeBern(const TFltV &_MuV)
Definition: mag.h:97
void GenMtx(const int &Dim)
Definition: mag.h:36
const double GetProbMu(const int &NId1, const int &NId2, const int &AId, const int &Attr1, const int &Attr2, const bool Left=false, const bool Right=false) const
Definition: mag.cpp:576
const double GradPhiMI(const double &x, const int &NId, const int &AId, const double &Lambda, const double &DeltaQ, const TFltVV &CntVV)
Definition: mag.cpp:703
const TVal & At(const TSizeTy &X, const TSizeTy &Y) const
Definition: ds.h:2256